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2012│2011│2010│2009│2008│2007│2006│2005│2004│2003│2002│2001│2000│1999│1998│1997│1996│
before 1996

2013
  • The PCP protein Vangl2 regulates migration of hindbrain motor neurons by acting in floor plate cells, and independently of cilia function.
    Sittaramane, V., Pan, X., Glasco, D.M., Huang, P., Gurung, S., Bock, A., Li, S., Wang, H., Kawakami, K., Matise, M.P., and Chandrasekhar, A.
    Developmental Biology382, 400-412 PubMed(2013/10)
  • The parallel growth of motoneuron axons with the dorsal aorta depends on Vegfc/Vegfr3 signaling in zebrafish.
    Kwon, H.-B., Fukuhara, S., Asakawa, K., Ando, K., Kashiwada, T., Kawakami, K., Hibi, M., Kwon, Y.-G., Kim, K.-W., Alitalo, K., and Mochizuki, N.
    Development140, 4081-4090 PubMed
  • Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons.
    Satou, C., Kimura, Y., Hirata, H., Suster, M.L., Kawakami, K., and Higashijima, S.-i.
    Development140, 3927-3931 PubMed
  • Development of cerebellar neurons and glias revealed by in utero electroporation: Golgi-like labeling of cerebellar neurons and glias.
    Kita, Y., Kawakami, K., Takahashi, Y. and Murakami, F.
    PLoS One8, e70091 PubMed
  • Wnt/Dkk negative feedback regulates sensory organ size in zebrafish.
    Wada, H., Ghysen, A., Asakawa, K., Abe, G., Ishitani, T., and Kawakami, K.
    Current Biology23, 1559-1565 PubMed
  • Haemodynamically dependent valvulogenesis of zebrafish heart is mediated by flow-dependent expression of miR-21.
    Banjo, T., Grajcarek, J., Yoshino, D., Osada, H., Miyasaka, K.Y., Kida, Y.S., Ueki, Y., Nagayama, K., Kawakami, K., Matsumoto, T., Sato, M., and Ogura, T.
    Nature Communications4, 1978 PubMed
  • Cellular dissection of the spinal cord motor column by BAC transgenesis and gene trapping in zebrafish.
    Asakawa, K., Abe, G., and Kawakami, K.
    Frontiers in Neural Circuits7, 100 PubMed
  • Interhemispheric asymmetry of olfactory input-dependent neuronal specification in the adult brain.
    Kishimoto, N., Asakawa, K., Madelaine, R., Blader, P., Kawakami, K., and Sawamoto, K.
    Nature Neuroscience 16, 884-888 PubMed
  • Differential role for transcription factor Oct4 nucleocytoplasmic dynamics in somatic cell reprogramming and self-renewal of embryonic stem cells.
    Oka, M., Moriyama, T., Asally, M., Kawakami, K., and Yoneda, Y.
    The Journal of Biological Chemistry 288, 15085-15097 PubMed
  • Targeted expression of a chimeric channelrhodopsin in zebrafish under regulation of Gal4-UAS system.
    Umeda, K., Shoji, W., Sakai, S., Muto, A., Kawakami, K., Ishizuka, T., and Yawo, H.
    Neuroscience Research 75, 69-75 PubMed
  • Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.
    Hikichi, T., Matoba, R., Ikeda, T., Watanabe, A., Yamamoto, T., Yoshitake, S., Tamura-Nakano, M., Kimura, T., Kamon, M., Shimura, M., Kawakami, K., Okuda, A., Okochi, H., Inoue, T., Suzuki, A., and Masui, S.
    Proc. Natl. Acad. Sci. USA 110, 6412-6417 PubMed
  • Innervation is required for sense organ development in the lateral line system of adult zebrafish.
    Wada, H., Dambly-Chaudière, C., Kawakami, K., and Ghysen, A.
    Proc. Natl. Acad. Sci. USA 110, 5659-5664 PubMed
  • Glycinergic transmission and postsynaptic activation of CaMKII are required for glycine receptor clustering in vivo.
    Yamanaka, I., Miki, M., Asakawa, K., Kawakami, K., Oda, Y., and Hirata, H.
    Genes to Cells 18, 211-224 PubMed
  • Real-time visualization of neuronal activity during perception
    Muto, A., Ohkura, M., Abe, G., Nakai, J., and Kawakami, K.
    Current Biology 23, 307-311 PubMed
2012
  • A zebrafish model of intrahepatic cholangiocarcinoma by dual expression of hepatitis B virus X and hepatitis C virus core protein in liver.
    Liu, W., Chen, J.R., Hsu, C.H., Li, Y.H., Chen, Y.M., Lin, C.Y., Huang, S.J., Chang, Z.K., Chen, Y.C., Lin, C.H., Gong, H.Y., Lin, C.C., Kawakami, K., and Wu, J.L.
    Hepatology 56, 2268-2276 PubMed
  • Functional assessment of human coding mutations affecting skin pigmentation using zebrafish.
    Tsetskhladze, Z.R., Canfield, V.A., Ang, K.C., Wentzel, S.M., Reid, K.P., Berg, A.S., Johnson, S.L., Kawakami, K., and Cheng, K.C.
    PLoS ONE 7, e47398 PubMed
  • Visualization and exploration of Tcf/Lef function using a highly responsive Wnt/ β-catenin signaling-reporter transgenic zebrafish.
    Shimizu, N., Kawakami, K., and Ishitani, T.
    Developmental Biology 370, 71-85 PubMed
  • Tol2-mediated gene transfer and in ovo electroporation of the otic placode: a powerful and versatile approach for investigating embryonic development and regeneration of the chicken inner ear.
    Freeman, S., Chrysostomou, E., Kawakami, K., Takahashi, Y., and Daudet, N.
    Methods in Molecular Biology 916, 127-139 PubMed
  • Efficient genetic modification and germ-line transmission of primordial germ cells using piggyBac and Tol2 transposons.
    Macdonald, J., Taylor, L., Sherman, A., Kawakami, K., Takahashi, Y., Sang, H.M., and McGrew, M.J.
    Proc. Natl. Acad. Sci. USA 109, E1466-1472 PubMed
  • Mixture of differentially tagged Tol2 transposons accelerates conditional disruption of a broad spectrum of genes in mouse embryonic stem cells.
    Mayasari, N.I., Mukougawa, K., Shigeoka, T., Kawakami, K., Kawaichi, M., and Ishida, Y.
    Nucleic Acids Research 40, e97 PubMed
  • The ciliary protein Nek8/Nphp9 acts downstream of Inv/Nphp2 during pronephros morphogenesis and left-right establishment in zebrafish.
    Fukui, H., Shiba, D., Asakawa, K., Kawakami, K., and Yokoyama, T.
    FEBS Letter 586, 2273-2279 PubMed
  • Mechanism of pectoral fin outgrowth in zebrafish development.
    Yano, T., Abe, G., Yokoyama, H., Kawakami, K., and Tamura, K.
    Development 139, 2916-2925 PubMed
  • Transgenic line with gal4 insertion useful to study morphogenesis of craniofacial perichondrium, vascular endothelium-associated cells, floor plate, and dorsal midline radial glia during zebrafish development.
    Nakayama S, Ikenaga T, Kawakami K, Ono F, Hatta K.
    Development, Growth & Differentiation 54, 202-215 PubMed (2012/5/1)
  • Neuronal birth order identifies a dimorphic sensorineural map.
    Pujol-Martí J, Zecca A, Baudoin JP, Faucherre A, Asakawa K, Kawakami K, López-Schier H.
    The Journal of Neuroscience 32, 2976-2987 PubMed
  • Connexin 39.9 protein is necessary for coordinated activation of slow-twitch muscle and normal behavior in zebrafish.
    Hirata H, Wen H, Kawakami Y, Naganawa Y, Ogino K, Yamada K, Saint-Amant L, Low SE, Cui WW, Zhou W, Sprague SM, Asakawa K, Muto A, Kawakami K, Kuwada JY.
    The Journal of Biological Chemistry 287, 1080-1089 PubMed
  • The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution.
    Moriyama, Y., Kawanishi, T., Nakamura, R., Tsukahara, T., Sumiyama, K., Suster, M.L., Kawakami, K., Toyoda, A., Fujiyama, A., Yasuoka, Y., Nagao, Y., Sawatari, E., Shimizu, A., Wakamatsu, Y., Hibi, M., Taira, M., Okabe, M., Naruse, K., Hashimoto, H., Shimada, A., and Takeda, H.
    Current Biology 22, 601-607 PubMed
  • An mnr2b/hlxb9lb enhancer trap line that labels spinal and abducens motor neurons in zebrafish
    Asakawa, K., Higashijima, S., Kawakami, K.
    Developmental Dynamics 241, 327-332 PubMed

2011
  • Migration of neuronal precursors from the telencephalic ventricular zone into the olfactory bulb in adult zebrafish.
    Kishimoto, N., Alfaro-Cervello, C., Shimizu, K., Asakawa, K., Urasaki, A., Nonaka, S., Kawakami, K., Garcia-Verdugo, J.M., and Sawamoto, K.
    The Journal of Comparative Neurology 519, 3549-3565 PubMed

  • Imaging functional neural circuits in zebrafish with a new GCaMP and the Gal4FF-UAS system.
    Muto, A., and Kawakami, K.
    Communicative & Integrative Biology 4, 566-568 PubMed
  • Neuron and sensory epithelial cell fate is sequentially determined by Notch signaling in zebrafish lateral line Development.
    Mizoguchi,T., Togawa,S., Kawakami, K., and Itoh, M.
    The Journal of Neuroscience 31, 15522-15530 PubMed
  • Tol2-mediated transgenesis, gene trapping, enhancer trapping, and the Gal4-UAS system.
    Abe, G., Suster, M.L., and Kawakami, K.
    Methods in Cell Biology 104, 23-49 PubMed
  • Transposon-mediated BAC transgenesis in zebrafish.
    Suster, M.L., Abe, G., Schouw, A., and Kawakami, K.
    Nature Protocols 6, 1998-2021 PubMed
  • Stable, conditional, and muscle-fiber-specific expression of electroporated transgenes in chick limb muscle cells.
    Wang, H., Bonnet, A., Delfini, M.C., Kawakami, K., Takahashi, Y., and Duprez, D.
    Developmental Dynamics 240, 1223-1232 PubMed
  • Formation of the spinal network in zebrafish determined by domain-specific Pax genes.
    Ikenaga, T., Urban, J.M., Gebhart, N., Hatta, K., Kawakami, K., and Ono, F.
    The Journal of Comparative Neurology 519, 1562-1579 PubMed
  • Ectopic expression of cone-specific G protein-coupled receptor kinase GRK7 in zebrafish rods leads to lower photosensitivity and altered responses.
    Vogalis, F., Shiraki, T., Kojima, D., Wada, Y., Nishiwaki, Y., Jarvinen, J.L., Sugiyama, J., Kawakami, K., Masai, I., Kawamura, S., Fukada, Y., and Lamb, T.D.
    The Journal of Physiology 589, 2321-2348 PubMed
  • Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons.
    Shakes, L.A., Abe, G., Eltayeb, M.A., Wolf, H.M., Kawakami, K., Chatterjee, P.K.
    BMC Genomics 12, 351 PubMed
  • Genetic visualization with an improved GCaMP calcium indicator reveals spatiotemporal activation of the spinal motor neurons in zebrafish.
    Muto A, Ohkura M, Kotani T, Higashijima S, Nakai J, Kawakami K.
    Proc. Natl. Acad. Sci. USA 108(13), 5425-5430 PubMed
  • Nitro-fatty acids and cyclopentenone prostaglandins share strategies to activate the Keap1-Nrf2 system: a study using green fluorescent protein transgenic zebrafish.
    Tsujita T, Li L, Nakajima H, Iwamoto N, Nakajima-Takagi Y, Ohashi K, Kawakami K, Kumagai Y, Freeman BA, Yamamoto M, Kobayashi M.
    Genes Cells 16(1), 46-57 PubMed
  • Zebrafish eggs used as bioreactors for the production of bioactive tilapia insulin-like growth factors.
    Hu, S.Y., Liao, C.H., Lin, Y.P., Li, Y.H., Gong, H.Y., Lin, G.H., Kawakami, K., Yang, T.H., and Wu, J.L.
    Transgenic research 20, 73-83 PubMed

2010
  • The influence of donor nucleus source on the outcome of zebrafish somatic cell nuclear transfer.
    Siripattarapravat, K., Pinmee, B., Chang, E.A., Muñoz, J.D., Kawakami, K., Cibelli, J.B.
    International Journal of Developmental Biology 54, 1679-83 PubMed
  • Efficient gene transfer to endometrial adenocarcinoma cell line (Ishikawa) by Tol2 transposable element: a possible vector for gene therapy for implantation failure
    Suzuki, Y., Urasaki, A., Asami, Y., Isaka, K., and Kawakami, K.
    The Journal of Tokyo Medical University 68, 396-402
  • The habenula is crucial for experience-dependent modification of fear responses in zebrafish.
    Agetsuma, M., Aizawa, H., Aoki, T., Nakayama, R., Takahoko, M., Goto, M., Sassa, T., Amo, R., Shiraki, T., Kawakami, K., Hosoya, T., Higashijima, S., and Okamoto, H.
    Nature Neuroscience 13, 1354-1356 PubMed
  • zTrap: zebrafish gene trap and enhancer trap database.
    Kawakami, K., Abe, G., Asada, T., Asakawa, K., Fukuda, R., Ito, A., Lal, P., Mouri, N., Muto, A., Suster, M.L., Takakubo, H., Urasaki, A., Wada, H., and Yoshida, M.
    BMC Developmental Biology 10(1), 105 PubMed
  • Nitroreductase-mediated gonadal dysgenesis for infertility control of genetically modified zebrafish.
    Hu, S.Y., Lin, P.Y., Liao, C.H., Gong, H.Y., Lin, G.H., Kawakami, K., and Wu, J.L.
    Marine Biotechnology 12, 569-578 PubMed
  • A transgenic zebrafish for monitoring in vivo microtubule structures
    Asakawa, K., and Kawakami, K.
    Developmental Dynamics 239, 2695-2699 PubMed
  • Identification and characterization of alternative promoters of zebrafish Rtn-4/Nogo genes in cultured cells and zebrafish embryos.
    Chen, Y.C., Wu, B.K., Chu, C.Y., Cheng, C.H., Han, H.W., Chen, G.D., Lee, M.T., Hwang, P.P., Kawakami, K., Chang, C.C., and Huang, C.J.
    Nucleic Acids Research 38, 4635-4650 PubMed
  • The ubiquitin proteasome system is required for cell proliferation of the lens epithelium and for differentiation of lens fiber cells in zebrafish.
    Imai, F., Yoshizawa, A., Fujimori-Tonou, N., Kawakami, K., and Masai, I.
    Development 137, 3257-3268 PubMed
  • Sex Reversal in Zebrafish fancl Mutants Is Caused by Tp53-Mediated Germ Cell Apoptosis.
    Rodríguez-Marí, A., Cañestro, C., Bremiller, R.A,, Nguyen-Johnson, A., Asakawa, K., Kawakami,K., and Postlethwait, J.H.
    PLoS Genetics 6:e1001034 PubMed
  • Arteries provide essential guidance cues for lymphatic endothelial cells in the zebrafish trunk.
    Bussmann, J., Bos, F.L., Urasaki, A., Kawakami, K., Duckers, H.J., and Schulte-Merker, S.
    Development 137, 2653-2657 PubMed
  • Mib-Jag1-Notch signalling regulates patterning and structural roles of the notochord by controlling cell-fate decisions.
    Yamamoto, M., Morita, R., Mizoguchi, T., Matsuo, H., Isoda, M., Ishitani, T., Chitnis, A.B., Matsumoto, K., Crump, J.G., Hozumi, K., Yonemura, S., Kawakami, K., and Itoh, M.
    Development 137, 2527-2537 PubMed
  • Photoactivation of the CreER(T2) recombinase for conditional site-specific recombination with high spatiotemporal resolution.
    Sinha, D.K., Neveu, P., Gagey, N., Aujard, I., Le Saux, T., Rampon, C., Gauron, C., Kawakami, K., Leucht, C., Bally-Cuif, L., Volovitch, M., Bensimon, D., Jullien, L., and Vriz, S.
    Zebrafish 7, 199-204 PubMed
  • Progressive neurogenesis defines lateralis somatotopy.
    Pujol-Martí, J., Baudoin, J.P., Faucherre, A., Kawakami, K., and López-Schier, H.
    Developmental Dynamics 239, 1919-1930 PubMed
  • Comparative Analysis of Transposable Element Vector Systems in Human Cells.
    Grabundzija, I., Irgang, M., Mátés, L., Belay, E., Matrai, J., Gogol-Döring, A., Kawakami, K., Chen, W., Ruiz, P., Chuah, M.K., Vandendriessche, T., Izsvák, Z., and Ivics, Z.
    Molecular Therapy 18, 1200-1209 PubMed
  • Simultaneous expression of different transgenes in neurons and glia by combining in utero electroporation with the Tol2 transposon-mediated gene transfer system.
    Yoshida, A., Yamaguchi, Y., Nonomura, K., Kawakami, K., Takahashi, Y., and Miura, M.
    Genes to Cells 15, 501-512 PubMed
  • A simple and highly efficient transgenesis method in mice with the Tol2 transposon system and cytoplasmic microinjection.
    Sumiyama, K., Kawakami, K., and Yagita, K.
    Genomics 95, 306-311 PubMed
  • Dermal morphogenesis controls lateral line patterning during postembryonic development of teleost fish.
    Wada, H., Ghysen, A., Satou, C., Higashijima, S.I., Kawakami, K., Hamaguchi, S., and Sakaizumi, M.
    Developmental Biology 340, 583-594 PubMed
  • Development of the circadian oscillator during differentiation of mouse embryonic stem cells in vitro.
    Yagita, K., Horie, K., Koinuma, S., Nakamura, W., Yamanaka, I., Urasaki, A., Shigeyoshi, Y., Kawakami, K., Shimada, S., Takeda, J., and Uchiyama, Y.
    Proc. Natl. Acad. Sci. USA 107, 3846-3851 PubMed
  • Efficient transient rescue of hematopoietic mutant phenotypes in zebrafish using Tol2-mediated transgenesis.
    Takeuchi, M., Kaneko, H., Nishikawa, K., Kawakami, K., Yamamoto, M., and Kobayashi, M.
    Development Growth & Differentiation 52, 245-250 PubMed
  • Mys Protein Regulates Protein Kinase A Activity by Interacting with Regulatory Type I α Subunit during Vertebrate Development.
    Kotani, T., Iemura, S.I., Natsume, T., Kawakami, K., and Yamashita, M.
    The Journal of Biological Chemistry 285, 5106-5116 PubMed
  • Real-time monitoring of circadian clock oscillations in primary cultures of mammalian cells using Tol2 transposon-mediated gene transfer strategy.
    Yagita, K., Yamanaka, I., Emoto, N., Kawakami, K., and Shimada, S.
    BMC Biotechnology 10(1) : 3 PubMed
  • Interaction with surrounding normal epithelial cells influences signalling pathways and behaviour of Src-transformed cells.
    Kajita, M., Hogan, C., Harris, A.R., Dupre-Crochet, S., Itasaki, N., Kawakami, K., Charras, G., Tada, M., and Fujita, Y.
    Journal of Cell Science 123, 171-180 PubMed

2009
  • Sleep-wake regulation and hypocretin-melatonin interaction in zebrafish.
    Appelbaum, L., Wang, G.X., Maro, G.S., Mori, R., Tovin, A., Marin, W., Yokogawa, T., Kawakami, K., Smith, S.J., Gothilf, Y., Mignot, E., and Mourrain, P.
    Proc. Natl. Acad. Sci. USA 106, 21942 - 21947 PubMed
  • Illuminating cell-cycle progression in the developing zebrafish embryo.
    Sugiyama, M., Sakaue-Sawano, A., Iimura, T., Fukami, K., Kitaguchi, T., Kawakami, K., Okamoto, H., Higashijima, SI., and Miyawaki, A.
    Proc. Natl. Acad. Sci. USA 106, 20812 - 20817 PubMed
  • The transgensis and gene and enhancer trap methods in zebrafish by using the Tol2 transposable element.
    Kawakami, K.
    Essential zebrafish methods: genetics and genomics 153-173
  • Cis-regulation and chromosomal rearrangement of the fgf8 locus after the teleost/tetrapod split.
    Komisarczuk, A.Z., Kawakami, K., and Becker,T.S.
    Developmental Biology 336(2):301-12 PubMed
  • The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish.
    Asakawa, K., Kawakami, K.
    Methods 49(3):275-81 PubMed
  • Transposon-mediated BAC transgenesis in zebrafish and mice.
    Suster, ML., Sumiyama, K., Kawakami, K.
    BMC Genomics 16;10:477 PubMed
  • Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina.
    Picker, A., Cavodeassi, F., Machate, A., Bernauer, S., Hans, S., Abe, G., Kawakami, K., Wilson, SW., Brand, M.
    PLoS Biol 7(10):e1000214 PubMed
  • Estrogen-responsive transient expression assay using a brain aromatase-based reporter gene in zebrafish (Danio rerio).
    Kim, DJ., Seok, SH., Baek, MW., Lee, HY., Na, YR., Park, SH., Lee, HK., Dutta, NK., Kawakami, K., Park, JH.
    Comp Med 59(5):416-23 PubMed
  • A combination of transposable elements and magnetic cell sorting provides a very efficient transgenesis system for chicken primary erythroid progenitors.
    Mejia-Pous, C., Vinuelas, J., Faure, C., Kawakami, K., Takahashi, Y., and Gandrillon, O.
    BMC Biotechnology 18;9(1):81 PubMed
  • Developmental toxicity and brain aromatase induction by high genistein concentrations in zebrafish embryos.
    Kim, DJ., Seok, SH., Baek, MW., Lee, HY., Na, YR., Park, SH., Lee, HK., Dutta, NK., Kawakami, K., and Park, JH.
    Toxicology Mechanisms and Methods 19(3), 251-256 PubMed
  • Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish.
    Koide, T., Miyasaka, N., Morimoto, K., Asakawa, K., Urasaki, A., Kawakami, K., and Yoshihara, Y.
    Proc. Natl. Acad. Sci. USA 106, 9884-9889 PubMed
  • Transgenesis in zebrafish with the tol2 transposon system.
    Suster, ML., Kikuta, H., Urasaki, A., Asakawa, K., and Kawakami, K.
    Methods in Molecular Biology 561, 41-63 PubMed
  • Transcriptional regulation of a myeloid-lineage specific gene lysozyme C during zebrafish myelopoiesis.
    Kitaguchi, T., Kawakami, K., and Kawahara, A.
    Mechanisms of Development 126, 314-323 PubMed
  • Benomyl induction of brain aromatase and toxic effects in the zebrafish embryo.
    Kim, DJ., Seok, SH., Baek, MW., Lee, HY., Na, YR., Park, SH., Lee, HK., Dutta, NK., Kawakami, K., and Park, JH.
    Journal of Applied Toxicology 29(4), 289-294 PubMed
  • Analysis of genes and genome by the tol2-mediated gene and enhancer trap methods.
    Urasaki, A., and Kawakami, K.
    Methods in Molecular Biology 546, 85-102 PubMed
  • Transient and stable transgenesis using tol2 transposon vectors.
    Kikuta, H., and Kawakami, K.
    Methods in Molecular Biology 546, 69-84 PubMed
  • Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvae.
    Esaki, M., Hoshijima, K., Nakamura, N., Munakata, K., Tanaka, M., Ookata, K., Asakawa, K., Kawakami, K., Wang, W., Weinberg, ES., and Hirose, S.
    Developmental Biology 329, 116-129 PubMed
  • Recapitulation of zebrafish sncga expression pattern and labeling the habenular complex in transgenic zebrafish using green fluorescent protein reporter gene.
    Chen, YC., Cheng, CH., Chen, GD., Hung, CC., Yang, CH., Hwang, SP., Kawakami, K., Wu, BK., and Huang, CJ.
    Developmental Dynamics 238, 746-754 PubMed
  • Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation.
    Faucherre, A., Pujol-Martí J., Kawakami, K., and López-Schier H.
    PLoS ONE 4, e4477 PubMed
  • A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals.
    Suster, ML., Kania, A., Liao, M., Asakawa, K., Charron, F., Kawakami, K., and Drapeau, P.
    Developmental Biology 325, 422-433 PubMed
  • Expression of H-RASV12 in a zebrafish model of Costello syndrome causes cellular senescence in adult proliferating cells.
    Santoriello, C., Deflorian, G., Pezzimenti, F., Kawakami, K., Lanfrancone, L., d'Adda di Fagagna, F., and Mione, M.
    Disease Models & Mechanisms 2, 56-57 PubMed

2008
  • Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish
    Urasaki, A., Asakawa, K., and Kawakami, K.
    Proc. Natl. Acad. Sci. USA 105, 19827-19832 PubMed
  • Tracing retinal fiber trajectory with a method of transposon-mediated genomic integration in chick embryo.
    Harada, H., Takahashi, Y., Kawakami, K., Ogura, T., and Nakamura, H.
    Development Growth & Differentiation 50, 697-702 PubMed Cover
  • Transposition of the vertebrate Tol2 transposable element in Drosophila melanogaster
    Urasaki, A., Mito, T., Noji, S., Ueda, R., and Kawakami, K.
    Gene 425, 64-68 PubMed
  • G2R Cre reporter transgenic zebrafish.
    Yoshikawa, S., Kawakami, K., and Zhao, X.C.
    Developmental Dynamics 237,2460-2465 PubMed
  • Views on four key questions about zebrafish research.
    Aleström, P., Begemann, G., Carvan, M.J. 3rd, Cheng, K.C., Crosier, K., Crosier, P., Ekker, S., Huttenlocher, A., Kawakami, K., Kelly, G., Korzh, V., Lieschke, G., Mione, M., Neely, M.N., Neuhauss, S., and Trede, N.S.
    Zebrafish 5,9-24 PubMed
  • Targeted gene expression by the Gal4-UAS system in zebrafish
    Asakawa, K., and Kawakami, K.
    Development Growth & Differentiation 50, 391-399 PubMed
  • Ttransposon-mediated stable integration and tetracycline-inducible expression of electroporated transgenes in chicken embryos.
    Takahashi, Y., Watanabe,T., Nakagawa, S., Kawakami, K., and Sato, Y.
    Methods in Cell Biology 87, 271-280 PubMed
  • misty somites, a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance
    Kotani,T., and Kawakami, K.
    Developmental Biology 316, 383-396 PubMed
  • Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish
    Asakawa, K., Suster, M.L., Mizusawa, K., Nagayoshi, S., Kotani, T., Urasaki, A., Kishimoto, Y., Hibi, M., and Kawakami, K.
    Proc. Natl. Acad. Sci. USA 105, 1255-1260 PubMed
  • Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like.
    Nagayoshi, S., Hayashi, E., Abe, G., Osato,N., Asakawa, K., Urasaki, A., Horikawa, K., Ikeo, K., Takeda, H., and Kawakami, K.
    Development 135(1), 159-169 PubMed
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2007
  • Tol2: a versatile gene transfer vector in vertebrates
    Kawakami, K.
    Genome Biology 8 Suppl 1:S7 PubMed
  • A cardiac myosin light chain kinase regulates sarcomere assembly in the vertebrate heart.
    Seguchi, O., Takashima, S., Yamazaki, S., Asakura, M., Asano, Y., Shintani, Y., Wakeno, M., Minamino, T., Kondo, H., Furukawa, H., Nakamaru, K., Naito, A., Takahashi, T., Ohtsuka, T., Kawakami, K., Isomura, T., Kitamura, S., Tomoike, H., Mochizuki, N., and Kitakaze, M.
    The Journal of Clinical Investigation 117, 2812-2824 PubMed
  • Nodal signals mediate interactions between the extra-embryonic and embryonic tissues in zebrafish.
    Fan, X., Hagos, E.G., Xu, B., Sias, C., Kawakami, K., Burdine, R.D., and Dougan, S.T.
    Developmental Biology 310, 363-378 PubMed
  • Recombinant Tol2 transposase with activity in Xenopus embryos.
    Shibano, T., Takeda, M., Suetake, I., Kawakami, K., Asashima, M., Tajima, S., and Taira, M.
    FEBS Letters 581, 4333-4336 PubMed
  • Localization of ammonia transporter Rhcg1 in mitochondrion-rich cells of yolk sac, gill, and kidney of zebrafish and its ionic strength-dependent expression.
    Nakada, T., Hoshijima, K., Esaki, M., Nagayoshi, S., Kawakami, K., and Hirose, S.
    Am J Physiol Regul Integr Comp Physiol 293, R1743-R1753 PubMed
  • Stable integration and conditional expression of electroporated transgenes in chicken embryos.
    Sato, Y., Kasai, T., Nakagawa, S., Tanabe, K., Watanabe, T., Kawakami, K., and Takahashi, Y.
    Developmental Biology 305, 616-624 PubMed
  • Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.
    Scott, E.K., Mason, L., Arrenberg, A.B., Ziv, L., Gosse, N.J., Xiao, T., Chi, N.C., Asakawa, K., Kawakami, K., and Baier, H.
    Nature Methods 4, 323-326 PubMed
  • Spatiotemporal localization of germ plasm RNAs during zebrafish oogenesis.
    Kosaka, K., Kawakami, K., Sakamoto, H., and Inoue, K.
    Mechanisms of Development 124, 279-289 PubMed
  • Visualization in zebrafish larvae of Na+ uptake in mitochondria-rich cells whose differentiation is dependent on foxi3a
    Esaki, M., Hoshijima, K., Kobayashi, S., Fukuda, H., Kawakami, K., and Hirose, S.
    Am J Physiol Regul Integr Comp Physiol 292, R470-R480 PubMed
  • Patterning the zebrafish diencephalon by the conserved zinc-finger protein Fezl
    Jeong, J.Y., Einhorn, Z., Mathur, P., Chen, L., Lee,S., Kawakami, K., and Guo, S.
    Development 134, 127-136 PubMed
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2006
  • The Fugu tyrp1 promoter directs specific GFP expression in zebrafish: tools to study the RPE and the neural crest-derived melanophores.
    Zou, J., Beermann, F., Wang, J., Kawakami, K., and Wei, X.
    Pigment Cell Research 19, 615-627 PubMed
  • Migration of zebrafish primordial germ cells: a role for Myosin contraction and cytoplasmic flow.
    Blaser, H., Reichman-Fried, M., Castanon, I., Dumstrei, K., Marlow, F.L., Kawakami, K., Solnica-Krezel, L., Heisenberg, C.P., and Raz, E.
    Developmental Cell 11, 613-627 PubMed
  • Functional dissection of the Tol2 Transposable Element Identified the Minimal cis-Sequence and a Highly Repetitive Sequence in the Subterminal Region Essential for Transposition.
    Urasaki, A., Morvan, G., and Kawakami, K.
    Genetics 174, 639-649 PubMed
  • Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish.
    Fisher, S., Grice, E.A., Vinton, R.M., Bessling, S.L., Urasaki, A., Kawakami, K., and McCallion, A.S.
    Nature protocols 1, 1297-1305 PubMed
  • Cadherin is required for dendritic morphogenesis and synaptic terminal organization of retinal horizontal cells.
    Tanabe, K., Takahashi, Y., Sato, Y., Kawakami, K., Takeichi, M., and Nakagawa, S.
    Development 133, 4085-4096 PubMed
  • Genomic organization, alternative splicing, and multiple regulatory regions of the zebrafish fgf8 gene.
    Inoue, F., Nagayoshi, S., Ota, S., Islam, M.E., Tonou-Fujimori, N., Odaira, Y., Kawakami, K., and Yamasu, K.
    Development Growth & Differentiation 48, 447-462 PubMed
  • Tol2 transposon-mediated transgenesis in Xenopus tropicalis.
    Hamlet, M.R., Yergeau, D.A., Kuliyev, E., Takeda, M., Taira, M., Kawakami, K., and Mead, P.E.
    Genesis 44, 438-445 PubMed
  • Transposon-mediated gene trapping in zebrafish.
    Kotani, T., Nagayoshi, S., Urasaki, A., and Kawakami, K.
    Methods 39, 199-206 PubMed
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2005
  • Transposon tools and methods in zebrafish.
    Kawakami, K.
    Developmental Dynamics 234, 244-254 PubMed
  • DNA transposons in vertebrate functional genomics.
    Miskey, C., Izsvak, Z., Kawakami, K., and Ivics, Z.
    Cellular and Molecular Life Sciences 62, 629-641 PubMed
  • The zebrafish pob gene encodes a novel protein required for survival of red cone photoreceptor cells.
    Taylor, M. R., Kikkawa, S., Diez-Juan, A., Ramamurthy, V., Kawakami, K., Carmeliet, P., and Brockerhoff, S. E.
    Genetics 170, 263-273 PubMed
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2004
  • Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element.
    Kawakami, K.
    Methods in Cell Biology 77, 201-222 PubMed
  • The status, quality, and expansion of the NIH full-length cDNA project: The mammalian gene collection (MGC)
    Gerhard, D.S., Wagner, L., Feingold, E.A., Shenmen, C.M., Grouse, L.H., Schuler, G., Klein, S.L., Old, S., Rasooly, R., Good, P., Guyer, M., Peck, A.M., Derge, J.G., Lipman, D., Collins, F.S., Jang, W., Sherry, S., Feolo, M., Misquitta, L., Lee, E., Rotmistrovsky, K., Greenhut, S.F., Schaefer, C.F., Buetow, K., Bonner, T.I., Haussler, D., Kent, J., Kiekhaus, M., Furey, T., Brent, M., Prange, C., Schreiber, K., Shapiro, N., Bhat, N.K., Hopkins, R.F., Hsie, F., Driscoll, T., Soares, M.B., Casavant, T.L., Scheetz, T.E., Brown-stein, M.J., Usdin, T.B., Toshiyuki, S., Carninci, P., Piao, Y., Dudekula, D.B., Ko, M.S., Kawakami, K., Suzuki, Y., Sugano, S., Gruber, C.E., Smith, M.R., Simmons, B., Moore, T., Waterman, R., Johnson, S.L., Ruan, Y., Wei, C.L., Mathavan, S., Gunaratne, P.H., Wu, J., Garcia, A.M., Hulyk, S.W., Fuh, E., Yuan, Y., Sneed, A., Kowis, C., Hodgson, A., Muzny, D.M., McPherson, J., Gibbs, R.A., Fahey, J., Helton, E., Ketteman, M., Madan, A., Rodrigues, S., Sanchez, A., Whiting, M., Madari, A., Young, A.C., Wetherby, K.D., Granite, S.J., Kwong, P.N., Brinkley, C.P., Pearson, R.L., Bouffard, G.G., Blakesly, R.W., Green, E.D., Dickson, M.C., Rodriguez, A.C., Grimwood, J., Schmutz, J., Myers, R.M., Butterfield, Y.S., Griffith, M., Griffith, O.L., Krzywinski, M.I., Liao, N., Morin, R., Palmquist, D., Petrescu, A.S., Skalska, U., Smailus, D.E., Stott, J.M., Schnerch, A., Schein, J.E., Jones, S.J., Holt, R.A., Baross, A., Marra, M.A., Clifton, S., Makowski, K.A., Bosak, S., and Malek, J.; MGC Project Team
    Genome Research 14, 2121-2127 PubMed
  • Excision of the Tol2 transposable element of the medaka fish Oryzias latipes in Xenopus laevis and Xenopus tropicalis.
    Kawakami, K., Imanaka, K., Itoh, M., and Taira, M.
    Gene 338, 93-98 PubMed
  • Transposition of the Tol2 element, an Ac-like element from the Japanese medaka fish Oryzias latipes, in mouse embryonic stem cells.
    Kawakami, K., and Noda, T.
    Genetics 166, 895-899 PubMed
  • A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.
    Kawakami, K., Takeda, H., Kawakami, N., Kobayashi, M., Matsuda, N., and Mishina, M.
    Developmental Cell 7, 133-144 PubMed News
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2003
  • The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids.
    Terai, Y., Morikawa, N., Kawakami, K., and Okada, N.
    Proc. Natl. Acad. Sci. USA 100, 12798-12803 PubMed
  • Fugu ESTs: New resources for transcription analysis and genome annotation.
    Clark, M.S., Edwards, Y.J.K., Peterson, D., Clifton, S.W., Thompson, A.J., Sasaki, M., Suzuki, Y., Kikuchi, K., Watabe, S., Kawakami, K., Sugano. S., Elgar, G., and Johnson, S.L.
    Genome Research 13, 2747-2753 PubMed
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2002
  • Accelerated evolution of the surface amino acids in the WD-repeat domain encoded by the hagoromo gene in an explosively speciated lineage of east African cichlid fishes.
    Terai, Y., Morikawa, N., Kawakami, K., and Okada, N.
    Molecular Biology and Evolution 19, 574-578 PubMed
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2001
  • Characterization of a mouse gene (Fbxw6) that encodes a homologue of Caenorhabditis elegans SEL-10.
    Maruyama, S., Hatakeyama, S., Nakayama, K., Ishida, N., Kawakami, K., and Nakayama, K.-i.
    Genomics 78, 214-222 PubMed
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2000
  • Identification of a functional transposase of the Tol2 element, an Ac-like element from the Japanese medaka fish, and its transposition in the zebrafish germ lineage.
    Kawakami, K., Shima, A., and Kawakami, N.
    Proc. Natl. Acad. Sci. USA 97, 11403-11408 PubMed
  • Proviral insertions in the zebrafish hagoromo gene, encoding an F-box/WD40-repeat protein, cause stripe pattern anomalies.
    Kawakami , K., Amsterdam, A., Shimoda, N., Becker,T., Mugg, J., Shima, A., and Hopkins, N.
    Current Biology 10, 463-466 PubMed Cover
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1999
  • Identification of the Tol2 transposase of the medaka fish Oryzias latipes that catalyzes excision of a nonautonomous Tol2 element in zebrafish Danio rerio.
    Kawakami, K., and Shima, A.
    Gene 240, 239-244 PubMed
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1998
  • Excision of the Tol2 transposable element of the medaka fish, Oryzias latipes, in zebrafish, Danio rerio.
    Kawakami, K., Koga, K., Hori, H., and Shima, A.
    Gene 225, 17-22 PubMed
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1997
  • Retrovirus-mediated insertional mutagenesis in zebrafish and identification of a molecular marker for embryonic germ cells.
    Amsterdam, A., Yoon, C., Allende, M., Becker, T., Kawakami, K., Burgess, S., Gaiano, N., and Hopkins, N.
    Cold Spring Harbor Symp. Quant. Biol. 62, 437-450 PubMed
  • Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells.
    Yoon, C., Kawakami, K., and Hopkins, N.
    Development 124, 3157-3166 PubMed
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1996
  • Insertional mutagenesis in zebrafish identifies two novel genes, pescadillo and dead eye, essential for embryonic development.
    Allende, M., Amsterdam, A., Becker, T., Kawakami, K., Gaiano, N., and Hopkins, N.
    Genes & Development 10, 3141-3155 PubMed
  • Insertional mutagenesis and rapid cloning of essential genes in zebrafish.
    Gaiano, N., Amsterdam, A., Kawakami, K., Allende, M., Becker, T., and Hopkins, N.
    Nature 383, 829-832 PubMed
  • Highly efficient germ-line transmission of proviral insertions in zebrafish.
    Gaiano, N., Allende, M., Amsterdam, A., Kawakami, K., and Hopkins, N.
    Proc. Natl. Acad. Sci. USA 93, 7777-7782 PubMed
  • Rapid identification of transgenic zebrafish.
    Kawakami, K., and Hopkins, N.
    Trends in Genetics 12, 9-10 PubMed
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1993
  • A rare tRNA-Arg(CUU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae.
    Kawakami, K., Pande, S., Faiola, B., Moore, D. P., Boeke, J. D., Farabaugh, P. J., Strathern, J. N., Nakamura, Y., and Garfinkel, D. J.
    Genetics 135, 309-320 PubMed
  • MSI3, a multicopy suppressor of mutants hyper-activated in the RAS-cAMP pathway, encodes a novel HSP70 protein of Saccharomyces cerevisiae.
    Shirayama, M., Kawakami, K., Matsui, Y., Tanaka, K., and Toh-e, A.
    Molecular & general genetics 240, 323-332 PubMed
  • Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element.
    Ito, K., Kawakami, K., and Nakamura, Y.
    Proc. Natl. Acad. Sci. USA 90, 302-306 PubMed
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1992
  • Differential regulation of two genes encoding lysyl-tRNA synthetases in Escherichia coli: lysU-constitutive mutations compensate for a lysS null mutation.
    Kawakami, K., Ito, K., and Nakamura, Y.
    Molecular Microbiology 6, 1739-1746 PubMed Cover
  • Overproduction and purification of lysyl-tRNA synthetase encoded by the herC gene of Escherichia coli.
    Nakamura, Y., and Kawakami, K.
    Biochimie 74, 581-584 PubMed
  • Ty element-induced temperature sensitive mutations of Saccharomyces cerevisiae.
    Kawakami, K., Shafer, B. K., Garfinkel, D. J., Strathern, J. N., and Nakamura, Y.
    Genetics 131, 821-832 PubMed
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1991
  • Sequence and functional analysis of mutations in the gene encoding peptide-chain-release factor 2 of Escherichia coli.
    Mikuni, O., Kawakami, K., and Nakamura, Y.
    Biochimie 73, 1509-1516 PubMed
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1990
  • Autogenous suppression of an opal mutation in the gene encoding peptide chain release factor 2.
    Kawakami, K., and Nakamura, Y.
    Proc. Natl. Acad. Sci. USA 87, 8432-8436 PubMed
  • Alternative translation and functional diversity of release factor 2 and lysyl-tRNA synthetase.
    Nakamura, Y., Kawakami, K., and Mikuni, O.
    In Post-transcriptional control of gene expression: Springer-Verlag pp. 455-464
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1989
  • Isolation and characterization of herC, a mutation of Escherichia coli affecting maintenance of ColE1.
    Kawakami, K., Naito, S., Inoue, N., Nakamura, Y., Ikeda, H., and Uchida, H.
    Molecular & general genetics 219, 333-340 PubMed
  • Temperature-sensitive lethal mutant of Era, a G protein in Escherichia coli.
    Inada, T., Kawakami, K., Chen, S.-M., Takiff, H., Court, D. L., and Nakamura, Y.
    Journal of Bacteriology 171, 5017-5024 PubMed
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1988
  • Conditionally lethal and recessive UGA-suppressor mutations in the prfB gene encoding peptide chain release factor 2 of Escherichia coli.
    Kawakami, K., Inada, T., and Nakamura, Y.
    Journal of Bacteriology 170, 5378-5381 PubMed
  • Chromosomal location and structure of the operon encoding peptide-chain-release factor 2 of Escherichia coli.
    Kawakami, K., Jösson, Y. H., Björk, G. R., Ikeda, H., and Nakamura, Y.
    Proc. Natl. Acad. Sci. USA 85, 5620-5624 PubMed
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